JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZDHHC3_chr3_44910261_44981174	0/0	g0244	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0245	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0246	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0247	1	0	0	0	1	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0248	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0249	1	0	0	1	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0250	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0251	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0252	1	0	0	1	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0253	1	0	0	1	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0254	1	0	0	1	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0255	1	0	0	1	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0256	1	0	0	1	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0257	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0258	1	0	1	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0259	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0260	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0261	1	0	0	0	0	1	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0262	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0263	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0264	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0265	1	0	1	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0266	1	1	0	0	0	0	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	g0267	1	0	0	0	1	0	ZDHHC3	chr3	44910261	44981174
ZDHHC4_chr7_6572454_6594374	0/1	g0001	80	20	20	28	4	7	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	1/0	g0002	75	3	7	44	3	17	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0003	45	5	4	33	0	3	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0004	41	3	18	8	7	5	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0005	14	0	0	14	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0006	11	11	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0007	8	1	3	3	0	1	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0008	6	0	3	3	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0009	5	3	2	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0010	4	0	0	0	0	4	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0011	4	2	1	0	0	1	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0012	4	4	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0013	3	0	0	3	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0014	3	3	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0015	3	3	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0016	3	0	3	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0017	2	0	0	2	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0018	2	0	0	2	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0019	2	0	1	1	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0020	2	2	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0021	2	0	0	2	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0022	2	0	2	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0023	2	2	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0024	2	2	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0025	2	2	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0026	2	2	0	0	0	0	ZDHHC4	chr7	6572454	6594374