JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZDHHC4_chr7_6572454_6594374	0/0	g0077	1	0	0	1	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0078	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0079	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0080	1	0	0	1	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0081	1	1	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0082	1	1	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0083	1	1	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0084	1	1	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0085	1	0	0	1	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0086	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0087	1	0	0	1	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0088	1	1	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0089	1	0	0	1	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0090	1	0	0	1	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0091	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0092	1	0	0	1	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0093	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0094	1	0	0	0	1	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0095	1	0	0	0	1	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0096	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0097	1	0	0	1	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0098	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0099	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0100	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0101	1	1	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0102	1	1	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0103	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0104	1	0	1	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	g0105	1	1	0	0	0	0	ZDHHC4	chr7	6572454	6594374
ZDHHC5_chr11_57663114_57706182	0/0	g0001	9	2	3	2	0	2	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/1	g0002	7	0	3	2	1	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0003	4	0	0	4	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0004	3	3	0	0	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0005	3	1	2	0	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0006	3	1	0	1	1	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0007	3	3	0	0	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0008	3	0	3	0	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0009	3	1	0	1	0	1	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0010	2	0	2	0	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0011	2	2	0	0	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0012	2	0	1	0	1	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0013	2	0	1	0	0	1	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0014	2	0	0	2	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0015	2	0	1	0	1	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0016	2	0	1	0	1	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0017	2	0	2	0	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0018	2	0	1	1	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0019	2	0	2	0	0	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0020	2	0	1	0	1	0	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	g0021	2	0	0	1	0	1	ZDHHC5	chr11	57663114	57706182