JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZDHHC7_chr16_84969175_85016535	0/0	g0307	1	1	0	0	0	0	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	g0308	1	0	1	0	0	0	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	g0309	1	0	1	0	0	0	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	g0310	1	0	1	0	0	0	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	g0311	1	0	0	0	1	0	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	g0312	1	0	0	0	0	1	ZDHHC7	chr16	84969175	85016535
ZDHHC8_chr22_20126804_20153007	0/0	g0001	64	0	10	46	1	7	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0002	57	9	10	30	3	5	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0003	51	21	11	15	3	1	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0004	18	0	2	14	0	2	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0005	16	4	4	6	0	2	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0006	15	0	10	0	2	3	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0007	11	1	1	4	1	4	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0008	8	8	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0009	8	7	1	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0010	7	7	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0011	7	0	0	7	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0012	5	5	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0013	5	0	0	5	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0014	5	0	1	3	0	1	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0015	4	0	0	4	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0016	4	0	1	0	2	1	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0017	4	2	2	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0018	4	4	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0019	3	3	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0020	3	3	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0021	3	0	1	2	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0022	3	3	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0023	3	0	0	0	0	3	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0024	3	0	1	0	0	2	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0025	2	0	0	1	0	1	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0026	2	2	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0027	2	0	0	2	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0028	2	2	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0029	2	0	0	2	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0030	2	0	0	2	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0031	2	2	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0032	2	0	2	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0033	2	0	0	2	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0034	2	0	0	2	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0035	2	0	0	2	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0036	2	0	0	1	0	1	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0037	1	1	0	0	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0038	1	0	0	1	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0039	1	0	0	1	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0040	1	0	0	1	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0041	1	0	0	1	0	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0042	1	0	0	0	1	0	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0043	1	0	0	0	0	1	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	g0044	1	0	1	0	0	0	ZDHHC8	chr22	20126804	20153007