JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZER1_chr9_128724786_128776927	0/0	g0309	1	0	0	1	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0310	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0311	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0312	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0313	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0314	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0315	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0316	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0317	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0318	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0319	1	1	0	0	0	0	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	g0320	1	0	0	1	0	0	ZER1	chr9	128724786	128776927
ZFAND1_chr8_81696337_81726300	0/0	g0001	23	0	0	23	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0002	13	2	4	5	0	2	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0003	11	0	0	11	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0004	11	0	3	5	2	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0005	10	2	3	4	0	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	1/0	g0006	10	4	1	2	1	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0007	9	9	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0008	8	3	2	0	2	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0009	5	0	0	5	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0010	5	5	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0011	5	0	5	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0012	5	4	1	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0013	4	0	0	3	0	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0014	4	0	0	4	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0015	3	0	1	1	1	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0016	3	1	1	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0017	3	0	3	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0018	3	0	1	0	0	2	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0019	3	0	0	3	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0020	3	0	2	0	1	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0021	3	0	0	3	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0022	3	0	1	1	0	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0023	3	2	1	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0024	3	0	0	3	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0025	3	3	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0026	3	0	0	3	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0027	3	3	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0028	2	0	0	2	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0029	2	0	0	2	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0030	2	0	2	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0031	2	0	1	0	1	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0032	2	0	2	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0033	2	0	0	2	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0034	2	0	0	2	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/1	g0035	2	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0036	2	1	0	0	0	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0037	2	0	2	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0038	2	0	0	0	2	0	ZFAND1	chr8	81696337	81726300