JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZFAND1_chr8_81696337_81726300	0/0	g0189	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0190	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0191	1	0	0	0	0	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0192	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0193	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0194	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0195	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0196	1	0	0	0	0	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0197	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0198	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0199	1	0	0	0	0	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0200	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0201	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0202	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0203	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0204	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0205	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0206	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0207	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0208	1	0	1	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0209	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0210	1	0	1	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0211	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0212	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0213	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0214	1	0	0	1	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0215	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0216	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0217	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0218	1	0	1	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0219	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0220	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0221	1	0	0	0	0	1	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0222	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	g0223	1	1	0	0	0	0	ZFAND1	chr8	81696337	81726300
ZFAND2A_chr7_1147907_1165196	0/0	g0001	54	3	8	32	3	8	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0002	27	0	1	25	0	1	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0003	25	1	9	10	2	3	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0004	22	1	5	14	0	2	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0005	12	5	5	0	1	1	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0006	11	0	0	11	0	0	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0007	9	0	0	9	0	0	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0008	9	9	0	0	0	0	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	1/0	g0009	7	0	2	3	0	1	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0010	6	0	2	3	0	1	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0011	5	1	3	1	0	0	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0012	5	0	0	0	0	5	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0013	4	0	2	2	0	0	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0014	4	1	1	0	0	2	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	g0015	4	0	1	2	0	1	ZFAND2A	chr7	1147907	1165196