JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZFAND4_chr10_45610500_45677772	0/0	g0341	1	1	0	0	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0342	1	1	0	0	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0343	1	0	0	1	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0344	1	1	0	0	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0345	1	0	1	0	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0346	1	1	0	0	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0347	1	1	0	0	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0348	1	0	0	1	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0349	1	0	0	1	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0350	1	0	1	0	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0351	1	0	0	0	1	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0352	1	0	1	0	0	0	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	g0353	1	0	1	0	0	0	ZFAND4	chr10	45610500	45677772
ZFAND5_chr9_72346413_72370208	0/0	g0001	71	2	21	38	4	6	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0002	65	12	12	36	2	3	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0003	33	0	5	28	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0004	16	0	1	15	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0005	10	5	3	0	0	2	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/1	g0006	10	1	7	0	1	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	1/0	g0007	8	7	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0008	8	7	1	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0009	8	1	0	5	0	2	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0010	6	0	5	0	1	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0011	6	0	0	6	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0012	5	5	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0013	5	5	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0014	4	4	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0015	4	0	3	0	1	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0016	4	2	2	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0017	4	0	2	0	2	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0018	3	0	0	2	1	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0019	3	0	0	3	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0020	3	3	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0021	3	0	0	3	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0022	3	0	0	3	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0023	3	0	0	3	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0024	3	3	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0025	3	3	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0026	3	0	0	0	0	3	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0027	2	2	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0028	2	0	0	2	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0029	2	0	0	1	0	1	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0030	2	0	0	0	1	1	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0031	2	0	0	2	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0032	2	0	0	1	0	1	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0033	2	0	0	2	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0034	2	2	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0035	2	2	0	0	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0036	2	0	0	2	0	0	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	g0037	2	2	0	0	0	0	ZFAND5	chr9	72346413	72370208