JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZFR_chr5_32349350_32449740	0/0	g0366	1	0	0	1	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0367	1	0	0	1	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0368	1	0	0	1	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0369	1	0	0	1	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0370	1	0	0	1	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0371	1	0	0	1	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0372	1	1	0	0	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0373	1	1	0	0	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0374	1	1	0	0	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0375	1	0	0	1	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0376	1	0	0	1	0	0	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	g0377	1	0	0	1	0	0	ZFR	chr5	32349350	32449740
ZFTA_chr11_63754892_63773775	1/1	g0001	136	25	35	47	9	18	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0002	11	0	3	2	2	4	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0003	8	8	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0004	6	0	0	6	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0005	5	4	1	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0006	5	5	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0007	4	0	1	0	1	2	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0008	4	1	0	0	2	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0009	3	3	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0010	3	3	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0011	3	3	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0012	3	2	1	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0013	3	0	0	3	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0014	3	0	0	3	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0015	2	2	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0016	2	2	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0017	2	2	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0018	2	2	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0019	2	0	1	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0020	2	2	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0021	2	1	1	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0022	2	0	0	2	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0023	2	0	0	0	0	2	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0024	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0025	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0026	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0027	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0028	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0029	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0030	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0031	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0032	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0033	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0034	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0035	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0036	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0037	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0038	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775