JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZFTA_chr11_63754892_63773775	0/0	g0039	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0040	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0041	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0042	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0043	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0044	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0045	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0046	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0047	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0048	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0049	1	0	1	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0050	1	0	0	0	1	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0051	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0052	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0053	1	0	1	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0054	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0055	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0056	1	0	1	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0057	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0058	1	0	0	0	1	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0059	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0060	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0061	1	0	0	0	0	1	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0062	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0063	1	0	0	1	0	0	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	g0064	1	1	0	0	0	0	ZFTA	chr11	63754892	63773775
ZFTRAF1_chr8_144444582_144467871	0/1	g0001	84	2	20	50	4	7	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	1/0	g0002	45	0	5	39	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0003	16	1	5	1	1	8	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0004	12	12	0	0	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0005	12	0	2	10	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0006	9	1	0	8	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0007	8	6	2	0	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0008	7	0	0	7	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0009	6	0	2	0	0	4	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0010	6	0	0	6	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0011	6	0	2	4	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0012	6	0	0	6	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0013	6	0	3	0	3	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0014	5	4	1	0	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0015	5	3	0	2	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0016	4	0	0	4	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0017	4	4	0	0	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0018	4	0	1	0	2	1	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0019	4	0	3	0	1	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0020	4	0	1	3	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0021	4	0	4	0	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0022	3	3	0	0	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0023	3	0	0	3	0	0	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	g0024	3	3	0	0	0	0	ZFTRAF1	chr8	144444582	144467871