JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZFYVE16_chr5_80403064_80488379	0/0	g0217	1	0	1	0	0	0	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	g0218	1	0	0	0	0	1	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	g0219	1	1	0	0	0	0	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	g0220	1	0	0	1	0	0	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	g0221	1	0	0	1	0	0	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	g0222	1	0	1	0	0	0	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	g0223	1	1	0	0	0	0	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	g0224	1	1	0	0	0	0	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	g0225	1	0	1	0	0	0	ZFYVE16	chr5	80403064	80488379
ZFYVE19_chr15_40802089_40820084	0/1	g0001	90	1	7	65	6	10	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0002	60	1	13	34	2	10	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	1/0	g0003	46	3	21	11	5	5	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0004	26	25	1	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0005	19	0	1	18	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0006	16	5	2	9	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0007	14	3	5	4	0	2	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0008	11	11	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0009	11	3	5	0	2	1	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0010	8	7	1	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0011	7	0	3	4	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0012	7	7	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0013	6	0	2	2	0	2	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0014	5	0	0	5	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0015	4	3	1	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0016	3	3	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0017	3	1	0	1	1	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0018	3	0	0	2	0	1	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0019	2	0	0	0	0	2	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0020	2	0	0	2	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0021	2	0	0	2	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0022	2	0	0	2	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0023	2	2	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0024	2	0	2	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0025	2	1	0	0	0	1	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0026	2	0	0	2	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0027	2	2	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0028	2	2	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0029	2	2	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0030	1	0	1	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0031	1	0	0	1	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0032	1	0	0	1	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0033	1	0	0	1	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0034	1	1	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0035	1	0	0	1	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0036	1	1	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0037	1	0	0	1	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0038	1	1	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0039	1	1	0	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0040	1	0	1	0	0	0	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	g0041	1	0	0	1	0	0	ZFYVE19	chr15	40802089	40820084