JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZFY_chrY_2930381_2987506	0/0	g0130	1	1	0	0	0	0	ZFY	chrY	2930381	2987506
ZFY_chrY_2930381_2987506	0/0	g0131	1	0	0	1	0	0	ZFY	chrY	2930381	2987506
ZG16B_chr16_2825303_2837276	0/0	g0001	251	37	52	117	12	33	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0002	86	10	19	44	4	9	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0003	24	0	4	20	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0004	13	13	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0005	13	12	1	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0006	6	0	6	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0007	5	0	0	5	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0008	5	5	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0009	5	0	0	5	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0010	2	2	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0011	2	2	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0012	2	2	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0013	2	2	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0014	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0015	1	0	0	1	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0016	1	0	0	1	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0017	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0018	1	0	0	1	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0019	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0020	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0021	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0022	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0023	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0024	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0025	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0026	1	0	0	1	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0027	1	0	0	1	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0028	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0029	1	0	0	1	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0030	1	1	0	0	0	0	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	g0031	1	0	0	1	0	0	ZG16B	chr16	2825303	2837276
ZG16_chr16_29773256_29787973	0/1	g0001	259	61	47	114	10	26	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	1/0	g0002	29	13	1	14	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0003	14	0	4	5	2	3	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0004	4	3	1	0	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0005	4	4	0	0	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0006	2	2	0	0	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0007	1	0	0	1	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0008	1	0	0	1	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0009	1	1	0	0	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0010	1	0	0	0	0	1	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0011	1	0	1	0	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0012	1	1	0	0	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0013	1	1	0	0	0	0	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	g0014	1	0	0	1	0	0	ZG16	chr16	29773256	29787973
ZGLP1_chr19_10299803_10314815	0/1	g0001	77	1	10	53	1	11	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	g0002	52	1	7	38	2	4	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	g0003	34	4	12	10	3	5	ZGLP1	chr19	10299803	10314815