JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZHX3_chr20_41173455_41322731	0/0	g0357	1	0	0	1	0	0	ZHX3	chr20	41173455	41322731
ZIC1_chr3_147404365_147421719	1/1	g0001	199	46	43	79	7	22	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0002	82	23	10	39	4	6	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0003	50	1	9	38	0	2	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0004	5	4	1	0	0	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0005	5	5	0	0	0	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0006	4	0	3	0	1	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0007	4	0	1	0	1	2	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0008	2	0	0	2	0	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0009	2	0	0	0	0	2	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0010	1	0	0	1	0	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0011	1	0	0	1	0	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0012	1	0	0	1	0	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0013	1	0	1	0	0	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0014	1	1	0	0	0	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0015	1	0	0	1	0	0	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	g0016	1	0	0	0	1	0	ZIC1	chr3	147404365	147421719
ZIC2_chr13_99976784_99991765	1/0	g0001	148	2	29	94	6	16	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0002	115	30	20	42	7	16	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/1	g0003	63	26	8	27	0	1	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0004	53	12	6	24	3	8	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0005	21	8	11	0	2	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0006	16	0	2	11	0	3	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0007	9	8	0	1	0	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0008	4	3	1	0	0	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0009	3	3	0	0	0	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0010	2	2	0	0	0	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0011	2	1	1	0	0	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0012	2	0	1	0	0	1	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0013	1	0	1	0	0	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0014	1	0	0	0	0	1	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0015	1	0	0	1	0	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0016	1	1	0	0	0	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0017	1	0	0	1	0	0	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	g0018	1	0	0	1	0	0	ZIC2	chr13	99976784	99991765
ZIC3_chrX_137561127_137577102	0/0	g0001	45	13	9	18	2	3	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0002	42	4	11	18	2	7	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0003	24	0	5	18	0	1	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0004	23	9	5	5	2	2	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0005	20	3	4	8	1	4	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	1/0	g0006	17	3	4	8	1	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0007	14	8	2	2	0	2	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0008	12	1	4	5	0	2	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0009	10	1	2	0	2	5	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/1	g0010	8	3	0	3	0	1	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0011	8	0	1	7	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0012	7	3	2	1	0	1	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0013	7	0	0	6	0	1	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0014	7	1	1	4	0	1	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0015	7	6	1	0	0	0	ZIC3	chrX	137561127	137577102