JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZIC3_chrX_137561127_137577102	0/0	g0016	6	3	2	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0017	5	1	0	4	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0018	4	1	0	2	0	1	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0019	4	0	1	3	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0020	3	2	1	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0021	2	0	2	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0022	2	0	0	2	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0023	2	1	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0024	2	0	0	1	0	1	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0025	2	0	0	1	0	1	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0026	2	2	0	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0027	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0028	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0029	1	1	0	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0030	1	0	1	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0031	1	1	0	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0032	1	0	0	0	1	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0033	1	1	0	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0034	1	0	0	0	0	1	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0035	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0036	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0037	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0038	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0039	1	1	0	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0040	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0041	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0042	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0043	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0044	1	0	0	1	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0045	1	0	1	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0046	1	1	0	0	0	0	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	g0047	1	0	1	0	0	0	ZIC3	chrX	137561127	137577102
ZIC4_chr3_147381046_147411543	1/0	g0001	30	0	14	8	4	3	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/1	g0002	21	3	4	9	2	2	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0003	17	1	5	7	0	4	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0004	14	1	1	11	0	1	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0005	12	0	0	12	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0006	12	11	1	0	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0007	9	0	1	7	0	1	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0008	8	5	1	2	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0009	6	0	1	5	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0010	5	0	0	5	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0011	5	0	3	0	1	1	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0012	5	0	0	5	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0013	5	0	1	4	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0014	5	5	0	0	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0015	5	0	1	4	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0016	4	1	1	0	1	1	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0017	4	0	0	4	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0018	4	0	1	1	2	0	ZIC4	chr3	147381046	147411543