JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZIC4_chr3_147381046_147411543	0/0	g0169	1	1	0	0	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0170	1	1	0	0	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0171	1	1	0	0	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0172	1	0	0	1	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0173	1	0	0	0	0	1	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0174	1	0	0	0	0	1	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0175	1	0	1	0	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0176	1	1	0	0	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0177	1	0	0	1	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0178	1	0	0	0	0	1	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0179	1	0	0	1	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0180	1	0	0	1	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0181	1	0	1	0	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0182	1	0	1	0	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0183	1	0	0	1	0	0	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	g0184	1	0	0	1	0	0	ZIC4	chr3	147381046	147411543
ZIC5_chr13_99957964_99976767	0/1	g0001	82	1	13	52	4	11	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0002	28	1	6	8	4	9	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0003	18	0	2	11	1	4	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0004	12	0	0	12	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0005	12	1	0	10	0	1	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0006	11	1	1	8	0	1	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0007	11	1	7	0	2	1	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0008	9	0	1	6	1	1	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0009	8	8	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0010	7	7	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0011	5	1	2	0	1	1	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0012	5	1	0	0	2	2	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0013	5	0	5	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0014	4	3	1	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0015	4	0	0	4	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0016	4	1	3	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0017	4	4	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0018	4	0	0	3	1	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0019	4	2	1	0	0	1	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0020	3	0	0	2	0	1	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0021	3	0	0	3	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0022	3	0	0	3	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0023	3	0	0	3	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0024	3	2	1	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0025	3	3	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0026	3	0	0	3	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	1/0	g0027	3	0	2	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0028	3	2	1	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0029	3	0	0	3	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0030	3	0	0	3	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0031	3	2	1	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0032	3	3	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0033	2	0	1	1	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0034	2	0	1	0	0	1	ZIC5	chr13	99957964	99976767