JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZIC5_chr13_99957964_99976767	0/0	g0135	1	0	0	1	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0136	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0137	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0138	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0139	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0140	1	0	0	1	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0141	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0142	1	0	0	1	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0143	1	0	0	0	0	1	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0144	1	0	0	1	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0145	1	0	1	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0146	1	0	0	1	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0147	1	0	1	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0148	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0149	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0150	1	0	1	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0151	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0152	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	g0153	1	1	0	0	0	0	ZIC5	chr13	99957964	99976767
ZIK1_chr19_57579145_57598890	1/0	g0001	184	27	40	83	5	28	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0002	45	14	9	16	5	1	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0003	40	10	4	19	2	5	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0004	38	0	6	32	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0005	18	0	4	9	0	5	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0006	16	0	2	14	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0007	14	14	0	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/1	g0008	13	0	2	9	0	1	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0009	8	1	0	4	0	3	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0010	6	0	0	6	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0011	5	5	0	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0012	4	3	1	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0013	4	3	0	1	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0014	3	0	0	3	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0015	3	2	1	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0016	2	0	0	2	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0017	2	0	0	0	0	2	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0018	2	1	1	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0019	2	0	2	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0020	2	2	0	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0021	2	2	0	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0022	2	0	0	2	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0023	2	0	2	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0024	2	2	0	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0025	2	0	1	1	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0026	1	1	0	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0027	1	1	0	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0028	1	1	0	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0029	1	1	0	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0030	1	0	1	0	0	0	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	g0031	1	0	0	1	0	0	ZIK1	chr19	57579145	57598890