JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZIM2_chr19_56769547_56845726	0/0	g0288	1	0	1	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0289	1	0	0	1	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0290	1	0	0	1	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0291	1	0	0	1	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0292	1	0	0	1	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0293	1	0	0	1	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0294	1	0	0	1	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0295	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0296	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0297	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0298	1	0	1	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0299	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0300	1	0	1	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0301	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0302	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0303	1	0	1	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0304	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0305	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0306	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0307	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0308	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0309	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0310	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0311	1	1	0	0	0	0	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0312	1	0	0	0	0	1	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	g0313	1	0	0	1	0	0	ZIM2	chr19	56769547	56845726
ZIM3_chr19_57129096_57150202	0/0	g0001	33	0	3	29	0	1	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0002	32	1	5	21	3	2	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0003	22	1	9	3	1	8	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0004	18	0	1	17	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0005	11	0	4	4	1	2	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0006	10	0	3	7	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0007	9	0	2	4	1	2	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0008	5	0	0	5	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0009	5	5	0	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0010	4	0	0	4	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0011	4	0	1	1	2	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0012	4	4	0	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0013	4	4	0	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	1/0	g0014	4	1	2	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0015	4	4	0	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0016	3	0	0	3	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0017	3	0	3	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0018	3	0	0	0	0	3	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0019	3	0	3	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0020	3	0	3	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0021	3	0	3	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0022	3	3	0	0	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0023	3	0	0	3	0	0	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	g0024	3	3	0	0	0	0	ZIM3	chr19	57129096	57150202