JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZKSCAN1_chr7_100010596_100046689	0/0	g0209	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0210	1	1	0	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0211	1	0	0	0	1	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0212	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0213	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0214	1	1	0	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0215	1	0	1	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0216	1	1	0	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0217	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0218	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0219	1	0	1	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0220	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0221	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0222	1	0	0	0	0	1	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0223	1	0	1	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0224	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0225	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0226	1	0	0	0	0	1	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0227	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0228	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0229	1	0	1	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0230	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0231	1	0	0	0	0	1	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0232	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0233	1	1	0	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0234	1	0	1	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0235	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0236	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0237	1	1	0	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0238	1	0	1	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0239	1	0	1	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0240	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0241	1	0	0	1	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0242	1	0	0	0	0	1	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	g0243	1	1	0	0	0	0	ZKSCAN1	chr7	100010596	100046689
ZKSCAN2_chr16_25231001_25262845	1/0	g0001	37	0	6	25	2	3	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0002	31	1	7	21	0	2	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0003	26	0	2	22	1	1	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0004	16	6	2	8	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0005	10	0	0	10	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0006	10	0	4	3	0	3	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0007	8	8	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0008	7	0	7	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0009	5	2	2	0	1	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0010	5	0	1	3	1	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0011	5	0	1	2	0	2	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0012	5	4	1	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0013	4	4	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0014	4	0	4	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0015	4	4	0	0	0	0	ZKSCAN2	chr16	25231001	25262845