JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZKSCAN2_chr16_25231001_25262845	0/0	g0166	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0167	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0168	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0169	1	0	0	1	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0170	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0171	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0172	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0173	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0174	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0175	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0176	1	0	1	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0177	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0178	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0179	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	g0180	1	1	0	0	0	0	ZKSCAN2	chr16	25231001	25262845
ZKSCAN3_chr6_28344947_28374172	0/0	g0001	54	0	11	29	1	13	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0002	26	1	5	20	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0003	24	6	5	12	0	1	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0004	12	0	0	12	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	1/0	g0005	11	0	2	7	1	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0006	9	9	0	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0007	8	6	2	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0008	8	0	1	5	0	2	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0009	7	6	1	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0010	7	0	0	7	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0011	7	1	1	3	0	2	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0012	7	0	0	7	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0013	6	0	0	5	0	1	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0014	6	0	0	6	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0015	6	1	0	2	1	2	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0016	6	3	0	0	1	2	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0017	6	0	3	0	3	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0018	5	5	0	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0019	5	1	3	0	0	1	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0020	5	0	2	3	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0021	5	0	0	5	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0022	5	5	0	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0023	4	0	4	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0024	4	4	0	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0025	4	0	0	4	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0026	4	4	0	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0027	4	0	0	4	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0028	3	0	3	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0029	3	0	0	3	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0030	3	0	1	0	2	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0031	3	1	0	0	0	2	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0032	3	1	1	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0033	3	3	0	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0034	3	1	2	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0035	3	0	0	3	0	0	ZKSCAN3	chr6	28344947	28374172