JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZKSCAN3_chr6_28344947_28374172	0/0	g0136	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0137	1	1	0	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0138	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0139	1	0	1	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0140	1	0	1	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0141	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0142	1	0	1	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0143	1	0	1	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0144	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0145	1	0	1	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0146	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0147	1	0	0	0	0	1	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0148	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0149	1	0	0	0	1	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0150	1	0	0	0	0	1	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0151	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0152	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0153	1	0	1	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0154	1	0	1	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0155	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0156	1	0	0	1	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	g0157	1	1	0	0	0	0	ZKSCAN3	chr6	28344947	28374172
ZKSCAN4_chr6_28236697_28257269	1/0	g0001	81	0	12	48	7	13	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0002	37	3	2	32	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0003	29	0	5	21	0	3	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0004	28	1	6	19	0	2	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0005	23	3	3	15	0	2	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/1	g0006	22	13	0	4	1	3	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0007	21	6	1	11	1	2	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0008	10	9	1	0	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0009	8	2	3	0	3	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0010	8	0	0	8	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0011	6	1	2	2	0	1	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0012	6	2	1	0	0	3	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0013	6	4	2	0	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0014	6	5	1	0	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0015	5	0	0	5	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0016	5	1	2	0	0	2	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0017	5	2	3	0	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0018	5	5	0	0	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0019	5	0	4	0	1	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0020	3	0	3	0	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0021	3	0	0	3	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0022	3	0	2	0	1	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0023	3	3	0	0	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0024	3	3	0	0	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0025	3	0	0	3	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0026	3	2	0	0	0	1	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0027	3	3	0	0	0	0	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	g0028	3	3	0	0	0	0	ZKSCAN4	chr6	28236697	28257269