JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZMAT1_chrX_101877290_101937027	0/0	g0160	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0161	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0162	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0163	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0164	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0165	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0166	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0167	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0168	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0169	1	0	0	1	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0170	1	0	0	1	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0171	1	0	1	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0172	1	0	1	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0173	1	0	0	0	1	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0174	1	0	1	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0175	1	0	1	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0176	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0177	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0178	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0179	1	0	0	0	0	1	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0180	1	0	1	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0181	1	0	0	1	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0182	1	1	0	0	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0183	1	0	0	1	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0184	1	0	0	1	0	0	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	g0185	1	0	0	0	0	1	ZMAT1	chrX	101877290	101937027
ZMAT2_chr5_140695447_140711686	0/0	g0001	80	3	14	47	3	13	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/1	g0002	79	6	16	44	5	7	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0003	52	19	7	19	3	4	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0004	30	7	11	7	3	2	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0005	17	0	4	9	0	4	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0006	14	9	5	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	1/0	g0007	12	11	0	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0008	11	0	1	8	0	2	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0009	7	6	1	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0010	6	5	1	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0011	6	5	1	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0012	4	4	0	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0013	4	0	0	2	0	2	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0014	4	0	0	4	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0015	3	0	0	3	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0016	3	3	0	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0017	2	2	0	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0018	2	2	0	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0019	2	2	0	0	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0020	2	0	0	2	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0021	2	0	0	2	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0022	2	0	0	2	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0023	2	0	0	2	0	0	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	g0024	2	1	0	1	0	0	ZMAT2	chr5	140695447	140711686