JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BSG_chr19_567596_588493	0/0	g0173	1	0	0	0	0	1	BSG	chr19	567596	588493
BSND_chr1_54993933_55022172	0/0	g0001	57	2	20	27	2	6	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0002	28	2	2	21	1	2	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0003	27	1	2	20	0	4	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0004	22	0	1	21	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0005	13	0	6	7	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0006	10	6	1	2	1	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0007	9	1	4	0	1	3	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0008	8	0	0	8	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0009	8	0	0	8	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0010	8	0	0	8	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0011	7	0	2	0	1	4	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0012	5	3	2	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0013	5	0	0	5	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0014	5	4	1	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0015	5	1	0	3	0	1	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0016	5	0	4	0	1	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0017	5	0	1	3	0	1	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0018	5	5	0	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0019	4	0	0	4	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0020	4	0	0	4	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0021	4	0	0	4	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0022	4	2	0	2	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0023	4	4	0	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0024	4	4	0	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0025	4	0	0	4	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0026	4	0	1	0	1	2	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0027	3	3	0	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0028	3	3	0	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0029	3	0	0	3	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0030	3	2	1	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0031	3	3	0	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0032	3	3	0	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0033	3	0	0	1	0	2	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0034	3	1	0	2	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0035	3	0	0	3	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0036	3	0	0	3	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0037	3	3	0	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0038	3	0	1	2	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0039	3	0	3	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0040	3	0	0	3	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0041	3	0	0	0	1	2	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0042	3	2	1	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0043	2	0	0	0	0	2	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0044	2	0	0	2	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0045	2	2	0	0	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0046	2	0	0	2	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0047	2	1	0	1	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0048	2	0	0	2	0	0	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	g0049	2	1	1	0	0	0	BSND	chr1	54993933	55022172