JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BSPH1_chr19_47963046_47997170	0/0	g0406	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0407	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0408	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0409	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0410	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0411	1	0	1	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0412	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0413	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0414	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0415	1	0	1	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0416	1	0	0	0	1	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0417	1	0	1	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0418	1	0	0	0	0	1	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0419	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0420	1	0	0	0	0	1	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0421	1	0	1	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0422	1	0	1	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0423	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0424	1	0	1	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0425	1	0	0	0	1	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0426	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0427	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	g0428	1	1	0	0	0	0	BSPH1	chr19	47963046	47997170
BSPRY_chr9_113344541_113376222	0/0	g0001	10	0	3	7	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0002	8	0	0	8	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0003	8	0	0	7	0	1	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0004	7	0	2	1	2	2	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0005	6	0	3	0	2	1	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0006	6	0	0	5	0	1	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0007	5	0	3	2	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0008	5	0	0	5	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0009	4	0	4	0	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0010	4	0	0	3	0	1	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0011	4	0	1	3	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0012	4	0	0	4	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0013	4	0	0	4	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0014	4	4	0	0	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0015	3	0	0	3	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0016	3	0	0	3	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0017	3	0	1	2	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0018	3	0	0	1	0	2	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0019	3	0	0	3	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0020	3	3	0	0	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0021	3	0	2	0	1	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0022	3	0	0	3	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0023	3	0	0	3	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0024	3	0	0	3	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0025	3	0	2	0	1	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0026	2	2	0	0	0	0	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	g0027	2	0	0	2	0	0	BSPRY	chr9	113344541	113376222