JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF185_chrX_152893067_152978474	0/0	g0242	1	0	0	1	0	0	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	g0243	1	0	0	1	0	0	ZNF185	chrX	152893067	152978474
ZNF189_chr9_101393851_101415654	0/0	g0001	73	4	17	38	4	10	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	1/0	g0002	54	2	10	35	2	4	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/1	g0003	24	2	7	12	2	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0004	19	0	0	19	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0005	18	2	2	12	0	2	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0006	18	3	4	8	1	2	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0007	17	15	2	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0008	17	0	3	13	0	1	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0009	12	1	1	9	0	1	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0010	10	1	0	7	1	1	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0011	10	8	2	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0012	8	0	4	0	0	4	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0013	8	1	0	6	1	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0014	6	0	4	0	2	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0015	5	0	0	5	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0016	5	0	0	5	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0017	5	0	0	5	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0018	4	4	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0019	4	0	4	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0020	4	0	2	0	2	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0021	4	3	1	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0022	3	3	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0023	3	3	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0024	3	0	2	0	0	1	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0025	3	0	1	0	0	2	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0026	3	0	0	3	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0027	3	0	0	3	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0028	3	3	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0029	3	3	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0030	2	0	2	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0031	2	0	1	1	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0032	2	0	2	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0033	2	0	0	1	0	1	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0034	2	0	0	2	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0035	2	0	0	2	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0036	2	0	0	2	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0037	1	0	0	0	0	1	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0038	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0039	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0040	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0041	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0042	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0043	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0044	1	0	0	1	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0045	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0046	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0047	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	g0048	1	1	0	0	0	0	ZNF189	chr9	101393851	101415654