JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BST2_chr19_17397939_17410630	0/0	g0012	4	0	0	2	0	2	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0013	3	3	0	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0014	2	2	0	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0015	2	0	1	0	0	1	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0016	2	0	1	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0017	2	0	0	0	0	2	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0018	2	2	0	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0019	2	2	0	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0020	1	1	0	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0021	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0022	1	0	1	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0023	1	1	0	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0024	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0025	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0026	1	1	0	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0027	1	0	1	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0028	1	1	0	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0029	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0030	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0031	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0032	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0033	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0034	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0035	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0036	1	0	1	0	0	0	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	g0037	1	0	0	1	0	0	BST2	chr19	17397939	17410630
BSX_chr11_122972570_122986834	0/0	g0001	114	11	30	52	6	15	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	1/0	g0002	32	4	5	19	0	3	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0003	26	10	3	8	2	3	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0004	21	7	0	13	0	1	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/1	g0005	21	0	10	0	3	7	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0006	18	9	1	5	0	3	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0007	17	3	0	14	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0008	16	0	1	14	0	1	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0009	9	9	0	0	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0010	8	4	1	3	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0011	8	0	0	8	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0012	7	0	1	4	2	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0013	7	0	0	7	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0014	5	4	1	0	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0015	5	1	0	3	1	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0016	5	1	1	3	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0017	4	0	0	3	0	1	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0018	3	0	0	3	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0019	3	3	0	0	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0020	3	3	0	0	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0021	3	3	0	0	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0022	3	0	0	3	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0023	3	3	0	0	0	0	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	g0024	3	0	2	0	0	1	BSX	chr11	122972570	122986834