JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF280D_chr15_56625176_56738509	0/0	g0362	1	0	1	0	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0363	1	0	0	0	1	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0364	1	0	1	0	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0365	1	0	1	0	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0366	1	0	0	0	0	1	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0367	1	0	0	0	0	1	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0368	1	0	1	0	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0369	1	0	0	1	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0370	1	0	0	1	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0371	1	0	0	1	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0372	1	0	0	1	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0373	1	1	0	0	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0374	1	0	0	0	1	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0375	1	0	0	0	0	1	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	1/0	g0376	1	0	0	0	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0377	1	0	0	1	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0378	1	1	0	0	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0379	1	1	0	0	0	0	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	g0380	1	1	0	0	0	0	ZNF280D	chr15	56625176	56738509
ZNF281_chr1_200399951_200415036	0/1	g0001	203	39	32	110	6	15	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0002	105	20	18	59	4	4	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	1/0	g0003	58	3	23	8	7	16	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0004	9	9	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0005	6	0	0	6	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0006	4	1	3	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0007	4	4	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0008	4	4	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0009	4	0	1	0	1	2	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0010	3	3	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0011	2	2	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0012	2	0	0	0	0	2	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0013	2	0	0	2	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0014	2	2	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0015	2	0	0	2	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0016	2	0	0	1	0	1	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0017	1	0	0	1	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0018	1	1	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0019	1	1	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0020	1	0	0	0	0	1	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0021	1	1	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0022	1	0	0	1	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0023	1	0	0	1	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0024	1	1	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0025	1	1	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0026	1	0	1	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0027	1	1	0	0	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0028	1	0	0	1	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0029	1	0	0	1	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0030	1	0	0	1	0	0	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	g0031	1	0	0	1	0	0	ZNF281	chr1	200399951	200415036