JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF296_chr19_45066500_45081478	0/0	g0013	3	0	0	0	0	3	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0014	2	2	0	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0015	2	0	2	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0016	2	1	0	0	0	1	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0017	2	0	0	2	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0018	2	0	0	2	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0019	2	2	0	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0020	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0021	1	0	1	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0022	1	0	1	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0023	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0024	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0025	1	1	0	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0026	1	0	0	0	0	1	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0027	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0028	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0029	1	1	0	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0030	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0031	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0032	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0033	1	1	0	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0034	1	1	0	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0035	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0036	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0037	1	0	1	0	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0038	1	0	0	0	0	1	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0039	1	0	0	1	0	0	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	g0040	1	1	0	0	0	0	ZNF296	chr19	45066500	45081478
ZNF2_chr2_95160809_95189317	0/0	g0001	50	3	9	31	1	6	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0002	46	2	3	36	0	5	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0003	32	2	8	15	1	6	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0004	14	9	5	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0005	14	13	1	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0006	11	0	4	3	0	4	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0007	10	0	0	10	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0008	7	6	0	1	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0009	7	7	0	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0010	6	0	6	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0011	5	0	0	5	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0012	4	0	1	1	0	2	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0013	4	4	0	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0014	4	0	0	2	1	1	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0015	4	0	3	1	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0016	3	0	0	3	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0017	3	0	3	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0018	3	0	0	3	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0019	3	0	1	1	0	1	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0020	3	0	1	2	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0021	2	0	0	2	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0022	2	0	1	1	0	0	ZNF2	chr2	95160809	95189317