JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF2_chr2_95160809_95189317	0/0	g0123	1	0	0	1	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0124	1	0	0	0	0	1	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0125	1	1	0	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0126	1	0	0	1	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0127	1	0	0	1	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0128	1	0	0	0	0	1	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0129	1	0	0	1	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0130	1	0	1	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0131	1	0	1	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0132	1	0	0	1	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0133	1	0	0	1	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0134	1	1	0	0	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0135	1	0	0	1	0	0	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0136	1	0	0	0	0	1	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	g0137	1	1	0	0	0	0	ZNF2	chr2	95160809	95189317
ZNF300_chr5_150889399_150909980	1/1	g0001	116	7	25	64	7	11	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0002	68	5	9	45	3	6	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0003	45	1	7	34	0	3	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0004	36	3	16	2	4	11	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0005	23	23	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0006	10	8	1	1	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0007	9	0	0	9	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0008	8	6	2	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0009	7	7	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0010	5	0	0	4	0	1	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0011	5	0	0	5	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0012	5	5	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0013	4	4	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0014	4	0	0	4	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0015	4	0	2	2	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0016	4	0	0	0	0	4	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0017	3	3	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0018	3	0	0	3	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0019	2	2	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0020	2	2	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0021	2	0	0	2	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0022	2	2	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0023	2	1	1	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0024	2	0	0	2	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0025	2	0	0	2	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0026	2	1	1	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0027	2	1	1	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0028	2	0	0	2	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0029	1	0	1	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0030	1	1	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0031	1	1	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0032	1	1	0	0	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0033	1	0	0	1	0	0	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0034	1	0	0	0	0	1	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	g0035	1	1	0	0	0	0	ZNF300	chr5	150889399	150909980