JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTBD17_chr17_74351416_74366868	0/0	g0059	1	0	0	0	1	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0060	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0061	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0062	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0063	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0064	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0065	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0066	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0067	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0068	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0069	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0070	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0071	1	0	0	0	0	1	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0072	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0073	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	1/0	g0074	1	0	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0075	1	0	0	0	0	1	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0076	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0077	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0078	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0079	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0080	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0081	1	0	1	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0082	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0083	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0084	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0085	1	0	0	1	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0086	1	1	0	0	0	0	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	g0087	1	0	0	0	0	1	BTBD17	chr17	74351416	74366868
BTBD18_chr11_57738514_57756819	0/1	g0001	88	6	17	52	0	12	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0002	28	3	8	7	3	7	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0003	19	5	7	3	3	1	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0004	15	0	0	12	1	2	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0005	15	14	1	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0006	11	5	1	5	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0007	10	0	3	7	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0008	8	0	4	3	0	1	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0009	7	7	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0010	7	0	5	2	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0011	5	0	1	3	0	1	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0012	4	4	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0013	4	0	1	3	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0014	4	0	0	4	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0015	4	0	1	1	0	2	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0016	3	0	1	1	1	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0017	3	0	1	2	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0018	3	0	0	3	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0019	3	3	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0020	3	0	1	0	1	1	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0021	3	3	0	0	0	0	BTBD18	chr11	57738514	57756819