JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTBD18_chr11_57738514_57756819	0/0	g0072	1	0	0	1	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0073	1	0	0	1	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0074	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0075	1	0	0	1	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0076	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0077	1	0	0	0	0	1	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0078	1	0	0	1	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0079	1	0	1	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0080	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0081	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0082	1	0	0	1	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0083	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0084	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0085	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0086	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0087	1	0	1	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0088	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0089	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0090	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0091	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0092	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0093	1	0	0	1	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0094	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0095	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0096	1	0	0	1	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0097	1	0	0	1	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0098	1	0	0	0	0	1	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0099	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0100	1	0	0	0	0	1	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0101	1	0	0	0	0	1	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0102	1	0	1	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0103	1	0	0	0	0	1	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0104	1	0	1	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0105	1	1	0	0	0	0	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	g0106	1	0	1	0	0	0	BTBD18	chr11	57738514	57756819
BTBD19_chr1_44803523_44820585	0/0	g0001	60	9	4	44	0	3	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0002	43	2	13	23	0	5	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0003	33	3	6	11	0	13	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	1/0	g0004	26	8	3	7	3	4	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0005	24	1	0	19	3	1	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0006	22	6	3	12	0	1	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0007	19	19	0	0	0	0	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0008	17	0	7	6	2	2	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0009	15	0	0	15	0	0	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0010	14	0	7	7	0	0	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0011	10	1	2	4	1	2	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0012	7	0	3	1	2	1	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0013	6	0	1	0	1	4	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0014	6	6	0	0	0	0	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	g0015	5	1	3	0	0	1	BTBD19	chr1	44803523	44820585