JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF354B_chr5_178854953_178890020	0/0	g0220	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0221	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0222	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0223	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0224	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0225	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0226	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0227	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0228	1	0	0	0	1	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0229	1	0	0	0	1	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0230	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0231	1	0	0	0	0	1	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0232	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0233	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0234	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0235	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0236	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0237	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0238	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0239	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0240	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0241	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0242	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0243	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0244	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0245	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0246	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0247	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0248	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0249	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0250	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0251	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0252	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0253	1	0	1	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0254	1	0	0	0	0	1	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0255	1	1	0	0	0	0	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	g0256	1	0	0	1	0	0	ZNF354B	chr5	178854953	178890020
ZNF354C_chr5_179055373_179088977	0/0	g0001	33	1	8	19	1	4	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0002	17	0	3	12	0	2	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0003	16	0	6	10	0	0	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0004	13	0	0	13	0	0	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	1/0	g0005	13	1	6	1	1	3	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0006	11	1	4	4	0	2	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0007	11	0	0	11	0	0	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0008	10	1	0	9	0	0	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0009	10	1	1	8	0	0	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0010	9	1	3	3	0	2	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0011	7	0	0	7	0	0	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	g0012	7	0	1	4	0	2	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/1	g0013	5	1	0	1	1	1	ZNF354C	chr5	179055373	179088977