JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTBD2_chr19_1980448_2020714	0/0	g0342	1	1	0	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0343	1	1	0	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0344	1	0	1	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0345	1	0	0	0	1	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0346	1	0	1	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	1/0	g0347	1	0	0	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0348	1	0	0	1	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0349	1	0	0	1	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0350	1	0	0	0	0	1	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0351	1	1	0	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0352	1	1	0	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0353	1	1	0	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0354	1	0	0	1	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0355	1	0	1	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0356	1	1	0	0	0	0	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	g0357	1	0	0	1	0	0	BTBD2	chr19	1980448	2020714
BTBD3_chr20_11912893_11931595	0/0	g0001	270	40	59	137	11	23	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0002	78	16	2	50	0	10	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	1/1	g0003	20	2	11	0	0	5	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0004	10	10	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0005	10	1	2	7	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0006	7	0	0	7	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0007	6	5	1	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0008	4	4	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0009	3	3	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0010	3	3	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0011	3	0	0	3	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0012	3	0	0	3	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0013	2	2	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0014	2	1	1	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0015	2	2	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0016	2	0	0	2	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0017	2	0	0	2	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0018	1	0	0	0	1	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0019	1	0	1	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0020	1	1	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0021	1	0	0	0	0	1	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0022	1	0	0	1	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0023	1	0	1	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0024	1	0	0	1	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0025	1	1	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0026	1	0	0	0	0	1	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0027	1	1	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0028	1	0	1	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0029	1	0	1	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0030	1	0	0	1	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0031	1	1	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0032	1	0	1	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0033	1	1	0	0	0	0	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	g0034	1	0	1	0	0	0	BTBD3	chr20	11912893	11931595