JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF397_chr18_35236034_35254808	0/0	g0001	90	10	15	49	4	12	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0002	79	12	22	34	7	4	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0003	72	7	5	58	1	1	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0004	43	3	6	34	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0005	29	14	3	6	1	5	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0006	14	1	1	8	0	4	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0007	12	9	3	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0008	8	0	8	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/1	g0009	8	5	1	0	0	1	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0010	7	7	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0011	7	0	1	5	0	1	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0012	6	6	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0013	5	0	2	3	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0014	5	1	1	1	0	2	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0015	5	5	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0016	4	3	0	1	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0017	4	0	0	4	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0018	3	1	0	2	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0019	3	0	1	1	1	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0020	3	0	1	0	0	2	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0021	2	0	0	2	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0022	2	0	0	0	0	2	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0023	2	2	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0024	2	0	0	1	0	1	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0025	2	1	1	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	1/0	g0026	2	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0027	1	0	0	1	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0028	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0029	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0030	1	0	1	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0031	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0032	1	0	0	0	0	1	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0033	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0034	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0035	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0036	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0037	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0038	1	0	1	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0039	1	0	0	1	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0040	1	0	1	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0041	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0042	1	0	0	1	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0043	1	1	0	0	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0044	1	0	0	1	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0045	1	0	0	1	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0046	1	0	0	1	0	0	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	g0047	1	0	0	1	0	0	ZNF397	chr18	35236034	35254808
ZNF398_chr7_149142453_149188042	0/0	g0001	4	4	0	0	0	0	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	g0002	4	1	2	0	0	1	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	g0003	4	0	1	3	0	0	ZNF398	chr7	149142453	149188042