JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF415_chr19_53102879_53137910	0/0	g0365	1	0	1	0	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0366	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0367	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0368	1	0	1	0	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0369	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0370	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0371	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0372	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0373	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0374	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0375	1	0	0	0	0	1	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0376	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0377	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0378	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0379	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0380	1	0	0	0	0	1	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0381	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0382	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0383	1	0	1	0	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0384	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0385	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0386	1	0	1	0	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0387	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0388	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0389	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0390	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0391	1	0	0	1	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0392	1	1	0	0	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0393	1	0	1	0	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0394	1	0	1	0	0	0	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	g0395	1	0	1	0	0	0	ZNF415	chr19	53102879	53137910
ZNF416_chr19_57566566_57583911	1/0	g0001	103	9	18	61	1	13	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0002	68	10	11	32	6	9	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0003	55	13	10	24	1	7	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0004	49	9	6	25	1	8	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0005	42	15	7	19	0	1	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0006	8	0	0	8	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0007	7	0	0	7	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0008	7	0	0	5	0	2	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0009	5	0	3	2	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0010	4	0	0	4	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0011	3	0	2	0	1	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0012	3	0	2	0	1	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/1	g0013	3	0	2	0	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0014	3	3	0	0	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0015	3	0	0	3	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0016	3	3	0	0	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0017	2	2	0	0	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0018	2	2	0	0	0	0	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	g0019	2	2	0	0	0	0	ZNF416	chr19	57566566	57583911