JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF43_chr19_21799946_21841182	0/0	g0317	1	0	0	1	0	0	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	g0318	1	0	0	0	0	1	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	g0319	1	1	0	0	0	0	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	g0320	1	0	1	0	0	0	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	g0321	1	1	0	0	0	0	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	g0322	1	1	0	0	0	0	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	g0323	1	0	0	1	0	0	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	g0324	1	1	0	0	0	0	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	g0325	1	1	0	0	0	0	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	g0326	1	1	0	0	0	0	ZNF43	chr19	21799946	21841182
ZNF440_chr19_11809273_11840216	0/0	g0001	30	0	3	20	1	6	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0002	20	0	2	17	0	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0003	13	0	0	13	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0004	12	0	2	7	1	2	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0005	10	10	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0006	8	0	4	4	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0007	7	3	3	0	0	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	1/0	g0008	7	1	4	0	0	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0009	7	0	1	2	3	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0010	6	0	0	6	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0011	5	0	0	5	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0012	4	0	3	0	1	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0013	4	0	0	3	0	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0014	4	0	2	1	0	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0015	3	0	0	3	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0016	3	3	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0017	3	3	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0018	3	0	1	2	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0019	3	1	0	2	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0020	3	0	0	3	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0021	3	0	2	0	1	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0022	3	0	0	3	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0023	3	0	0	2	0	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0024	3	0	3	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0025	2	0	0	2	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0026	2	1	1	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0027	2	1	0	1	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0028	2	0	0	2	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0029	2	0	0	2	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0030	2	1	0	0	0	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0031	2	0	1	0	1	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0032	2	2	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0033	2	0	1	0	1	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0034	2	0	0	0	0	2	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0035	2	0	0	1	0	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0036	2	2	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0037	2	0	0	2	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0038	2	0	0	2	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/1	g0039	2	0	1	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0040	2	0	0	2	0	0	ZNF440	chr19	11809273	11840216