JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF440_chr19_11809273_11840216	0/0	g0191	1	0	1	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0192	1	0	0	1	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0193	1	0	0	0	0	1	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0194	1	0	1	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0195	1	0	1	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0196	1	0	1	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0197	1	1	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0198	1	1	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0199	1	0	0	1	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0200	1	1	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0201	1	0	0	0	1	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0202	1	1	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0203	1	1	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0204	1	1	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0205	1	1	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0206	1	0	0	1	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0207	1	1	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0208	1	1	0	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0209	1	0	1	0	0	0	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	g0210	1	0	0	1	0	0	ZNF440	chr19	11809273	11840216
ZNF441_chr19_11762000_11789078	0/1	g0001	94	4	29	51	4	5	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0002	38	10	16	2	2	8	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0003	29	0	2	25	0	2	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	1/0	g0004	25	3	9	6	3	3	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0005	13	0	0	13	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0006	13	11	0	2	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0007	9	0	0	9	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0008	6	0	0	6	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0009	5	5	0	0	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0010	5	0	0	5	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0011	5	5	0	0	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0012	5	0	0	5	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0013	5	0	2	3	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0014	4	4	0	0	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0015	4	0	1	0	0	3	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0016	3	2	0	0	1	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0017	3	0	0	3	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0018	3	3	0	0	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0019	3	0	0	2	0	1	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0020	3	0	0	3	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0021	3	1	2	0	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0022	3	1	0	2	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0023	3	1	0	1	0	1	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0024	3	3	0	0	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0025	2	2	0	0	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0026	2	0	0	2	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0027	2	2	0	0	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0028	2	1	1	0	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0029	2	0	1	1	0	0	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	g0030	2	0	0	2	0	0	ZNF441	chr19	11762000	11789078