JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTC_chr4_74739759_74799523	0/0	g0294	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0295	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0296	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0297	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0298	1	0	1	0	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0299	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0300	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0301	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0302	1	0	1	0	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0303	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0304	1	0	1	0	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0305	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0306	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0307	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0308	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0309	1	0	1	0	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0310	1	0	1	0	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0311	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0312	1	0	1	0	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0313	1	1	0	0	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0314	1	0	0	0	0	1	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0315	1	1	0	0	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0316	1	0	1	0	0	0	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	g0317	1	0	0	1	0	0	BTC	chr4	74739759	74799523
BTD_chr3_15596745_15658714	0/0	g0001	20	0	1	14	1	4	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0002	12	1	5	6	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0003	9	1	4	0	1	3	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0004	8	8	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0005	7	0	2	5	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0006	7	0	4	2	0	1	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0007	6	0	1	4	0	1	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0008	6	0	0	6	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0009	5	0	0	5	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0010	4	0	0	4	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0011	4	0	2	0	0	2	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0012	4	0	3	1	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0013	3	0	0	3	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0014	3	3	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0015	3	0	0	3	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0016	3	0	3	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0017	3	0	0	3	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0018	3	0	0	3	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0019	3	3	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0020	3	0	0	3	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0021	2	0	0	2	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0022	2	1	0	0	1	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0023	2	0	0	2	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0024	2	0	0	0	0	2	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0025	2	0	1	1	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0026	2	0	0	2	0	0	BTD	chr3	15596745	15658714