JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF488_chr10_47360496_47389293	0/0	g0241	1	1	0	0	0	0	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	g0242	1	0	1	0	0	0	ZNF488	chr10	47360496	47389293
ZNF48_chr16_30390420_30405108	0/0	g0001	219	33	48	99	10	29	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	1/1	g0002	52	8	16	16	2	8	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0003	33	22	8	1	1	1	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0004	11	11	0	0	0	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0005	9	1	1	5	0	2	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0006	6	5	1	0	0	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0007	6	1	1	3	0	1	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0008	4	0	1	3	0	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0009	3	0	0	3	0	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0010	3	0	0	3	0	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0011	3	3	0	0	0	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0012	2	0	2	0	0	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0013	1	0	0	0	0	1	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0014	1	0	0	0	1	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0015	1	0	0	1	0	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0016	1	1	0	0	0	0	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	g0017	1	1	0	0	0	0	ZNF48	chr16	30390420	30405108
ZNF490_chr19_12571100_12615813	0/0	g0001	3	0	0	3	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0002	2	2	0	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0003	2	0	1	0	1	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0004	2	0	0	2	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0005	2	0	0	2	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0006	1	0	0	1	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0007	1	0	0	1	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0008	1	1	0	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0009	1	1	0	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0010	1	1	0	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0011	1	1	0	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0012	1	0	0	1	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0013	1	0	1	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0014	1	0	0	0	0	1	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0015	1	0	1	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0016	1	0	1	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0017	1	1	0	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0018	1	0	0	1	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0019	1	0	0	0	1	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0020	1	0	1	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0021	1	0	0	1	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0022	1	0	0	1	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0023	1	0	0	1	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0024	1	0	0	1	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0025	1	1	0	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0026	1	0	1	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0027	1	0	1	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0028	1	0	1	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0029	1	0	0	0	0	1	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0030	1	1	0	0	0	0	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	g0031	1	0	1	0	0	0	ZNF490	chr19	12571100	12615813