JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTD_chr3_15596745_15658714	0/0	g0277	1	0	0	1	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0278	1	0	1	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0279	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0280	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0281	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0282	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0283	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0284	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0285	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0286	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0287	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0288	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0289	1	0	0	1	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0290	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0291	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0292	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0293	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0294	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0295	1	1	0	0	0	0	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	g0296	1	0	0	0	0	1	BTD	chr3	15596745	15658714
BTF3L4_chr1_52051295_52095716	0/0	g0001	2	0	2	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0002	2	0	0	2	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0003	2	0	0	2	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0004	2	0	0	2	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0005	2	0	0	2	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0006	2	0	0	0	0	2	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0007	2	0	0	0	2	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0008	2	1	0	1	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0009	2	0	0	2	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0010	2	0	0	2	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0011	2	0	0	0	0	2	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0012	2	0	0	2	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0013	2	0	2	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0014	2	2	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0015	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0016	1	0	0	1	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0017	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0018	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0019	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0020	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0021	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0022	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0023	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0024	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0025	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0026	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0027	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0028	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0029	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	g0030	1	1	0	0	0	0	BTF3L4	chr1	52051295	52095716