JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF516_chr18_76352682_76500242	0/0	g0335	1	0	1	0	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0336	1	0	1	0	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0337	1	0	1	0	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0338	1	0	0	1	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0339	1	0	0	1	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0340	1	0	0	1	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0341	1	0	0	1	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0342	1	0	0	1	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0343	1	1	0	0	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0344	1	1	0	0	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0345	1	0	1	0	0	0	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	g0346	1	0	1	0	0	0	ZNF516	chr18	76352682	76500242
ZNF517_chr8_144793913_144815084	0/0	g0001	98	12	17	49	4	16	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0002	79	2	15	57	2	3	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/1	g0003	75	1	20	40	2	11	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0004	14	13	1	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0005	9	9	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0006	8	6	1	0	1	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0007	7	0	0	7	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0008	7	6	1	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0009	6	6	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0010	6	0	5	0	1	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0011	5	5	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0012	4	4	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0013	4	0	0	3	0	1	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0014	4	0	4	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0015	3	3	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0016	3	0	2	0	1	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0017	3	0	0	0	2	1	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0018	3	0	0	3	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0019	2	0	0	0	0	2	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0020	2	0	0	2	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0021	2	0	1	0	1	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0022	2	0	2	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0023	2	0	2	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0024	2	2	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0025	2	0	0	0	0	2	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0026	2	2	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0027	1	1	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0028	1	1	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0029	1	0	1	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0030	1	0	1	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0031	1	1	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0032	1	0	0	0	0	1	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0033	1	0	0	1	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0034	1	0	0	1	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0035	1	0	1	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0036	1	0	0	1	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0037	1	1	0	0	0	0	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	g0038	1	0	0	1	0	0	ZNF517	chr8	144793913	144815084