JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF518B_chr4_10434880_10462426	0/0	g0141	1	1	0	0	0	0	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	g0142	1	0	0	0	0	1	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	g0143	1	0	0	1	0	0	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	g0144	1	0	0	0	0	1	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	g0145	1	1	0	0	0	0	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	g0146	1	0	0	1	0	0	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	g0147	1	1	0	0	0	0	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	g0148	1	0	0	1	0	0	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	g0149	1	0	0	0	0	1	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	g0150	1	0	1	0	0	0	ZNF518B	chr4	10434880	10462426
ZNF519_chr18_14094938_14137435	0/0	g0001	46	1	12	29	1	3	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0002	14	4	6	4	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0003	13	1	6	3	1	2	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0004	12	0	0	12	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0005	10	0	0	10	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0006	9	1	6	0	2	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0007	8	0	5	3	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0008	7	0	0	7	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0009	6	0	0	6	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0010	6	6	0	0	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0011	6	0	0	6	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0012	6	2	1	2	0	1	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0013	5	0	0	5	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0014	5	1	0	4	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0015	5	0	0	3	0	2	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0016	4	0	0	4	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0017	4	0	0	0	0	4	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0018	3	0	0	3	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0019	3	0	1	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0020	3	0	0	3	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0021	3	0	3	0	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0022	3	0	0	0	1	2	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	1/0	g0023	3	2	0	0	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0024	3	3	0	0	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0025	3	1	2	0	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0026	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0027	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0028	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0029	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0030	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0031	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0032	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0033	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0034	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0035	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0036	2	0	0	2	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0037	2	0	2	0	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0038	2	0	0	0	0	2	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0039	2	2	0	0	0	0	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	g0040	2	0	1	0	0	1	ZNF519	chr18	14094938	14137435