JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF525_chr19_53360705_53391590	0/0	g0278	1	0	0	1	0	0	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	g0279	1	0	0	1	0	0	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	g0280	1	0	0	1	0	0	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	g0281	1	0	0	1	0	0	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	g0282	1	0	0	0	0	1	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	g0283	1	0	1	0	0	0	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	g0284	1	0	0	0	0	1	ZNF525	chr19	53360705	53391590
ZNF526_chr19_42215312_42233201	1/1	g0001	69	3	21	28	6	9	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0002	38	1	16	13	4	4	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0003	32	13	2	14	0	3	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0004	17	1	4	11	1	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0005	16	16	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0006	14	14	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0007	12	5	2	3	1	1	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0008	11	0	0	10	1	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0009	9	0	3	4	0	2	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0010	7	0	1	5	0	1	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0011	5	0	1	3	0	1	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0012	4	0	2	0	0	2	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0013	4	0	0	4	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0014	4	0	3	1	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0015	4	0	1	0	1	2	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0016	3	3	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0017	3	0	0	3	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0018	3	0	0	2	0	1	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0019	3	3	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0020	2	0	2	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0021	2	0	1	1	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0022	2	0	0	2	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0023	2	0	0	2	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0024	2	0	0	2	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0025	2	1	0	1	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0026	2	0	0	0	1	1	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0027	2	0	1	1	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0028	2	0	0	0	0	2	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0029	2	0	1	1	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0030	2	0	0	2	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0031	2	0	1	1	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0032	2	0	0	0	0	2	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0033	2	2	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0034	2	1	0	0	0	1	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0035	1	1	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0036	1	1	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0037	1	1	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0038	1	1	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0039	1	1	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0040	1	0	1	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0041	1	1	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0042	1	1	0	0	0	0	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	g0043	1	0	0	0	0	1	ZNF526	chr19	42215312	42233201