JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTG1_chr12_92135278_92150846	0/0	g0060	1	1	0	0	0	0	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	g0061	1	0	1	0	0	0	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	g0062	1	0	1	0	0	0	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	g0063	1	1	0	0	0	0	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	g0064	1	0	0	0	0	1	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	g0065	1	1	0	0	0	0	BTG1	chr12	92135278	92150846
BTG2_chr1_203300519_203314602	0/0	g0001	97	1	10	72	1	13	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/1	g0002	68	5	9	38	6	9	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0003	50	17	8	17	5	3	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0004	41	7	9	13	1	11	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0005	32	30	2	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0006	32	9	4	16	1	2	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0007	15	2	10	2	1	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	1/0	g0008	12	11	0	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0009	10	0	0	10	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0010	8	0	0	8	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0011	7	0	2	3	0	2	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0012	6	0	0	6	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0013	6	5	1	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0014	5	0	0	5	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0015	3	0	2	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0016	3	0	0	0	0	3	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0017	3	0	1	0	1	1	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0018	3	0	3	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0019	2	2	0	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0020	2	2	0	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0021	2	2	0	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0022	2	0	2	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0023	2	0	1	0	1	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0024	2	0	1	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0025	1	0	0	0	1	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0026	1	0	0	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0027	1	0	0	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0028	1	0	1	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0029	1	1	0	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0030	1	0	0	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0031	1	0	0	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0032	1	0	0	0	0	1	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0033	1	0	0	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0034	1	0	1	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0035	1	0	0	0	0	1	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0036	1	1	0	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0037	1	1	0	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0038	1	1	0	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0039	1	0	0	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0040	1	0	1	0	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0041	1	0	0	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0042	1	0	0	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0043	1	0	0	1	0	0	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	g0044	1	0	1	0	0	0	BTG2	chr1	203300519	203314602