JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF529_chr19_36538613_36578292	0/0	g0219	1	1	0	0	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0220	1	0	0	0	0	1	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0221	1	0	1	0	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0222	1	0	1	0	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0223	1	0	0	1	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0224	1	0	0	0	0	1	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0225	1	0	0	1	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0226	1	0	0	1	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0227	1	1	0	0	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0228	1	1	0	0	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0229	1	0	0	0	0	1	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0230	1	0	1	0	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0231	1	1	0	0	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0232	1	0	0	1	0	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0233	1	0	0	0	0	1	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0234	1	0	0	0	1	0	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	g0235	1	1	0	0	0	0	ZNF529	chr19	36538613	36578292
ZNF530_chr19_57594885_57615098	1/0	g0001	100	2	16	67	0	14	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0002	85	18	14	33	6	14	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0003	53	8	14	21	3	7	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0004	38	12	2	20	1	3	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0005	33	14	5	8	2	4	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0006	13	0	0	13	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0007	12	0	0	12	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0008	9	0	5	2	1	1	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0009	8	0	0	6	0	2	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0010	8	0	1	7	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0011	7	3	2	0	2	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0012	7	7	0	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0013	5	4	0	0	0	1	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0014	5	0	0	5	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0015	5	0	0	5	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0016	4	4	0	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0017	3	1	0	1	0	1	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0018	2	0	0	2	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0019	2	0	0	0	0	2	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0020	2	0	0	2	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0021	2	2	0	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0022	2	2	0	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0023	2	0	2	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0024	2	1	1	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0025	2	0	0	2	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0026	2	2	0	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0027	1	0	0	1	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0028	1	1	0	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0029	1	0	1	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0030	1	0	0	1	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0031	1	0	1	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/1	g0032	1	0	0	0	0	0	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	g0033	1	0	1	0	0	0	ZNF530	chr19	57594885	57615098