JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF541_chr19_47515690_47578148	0/0	g0274	1	0	0	1	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0275	1	0	0	1	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0276	1	0	0	1	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0277	1	0	1	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0278	1	0	0	1	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0279	1	0	1	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0280	1	1	0	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0281	1	1	0	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0282	1	0	0	1	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0283	1	1	0	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0284	1	0	1	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0285	1	1	0	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0286	1	0	1	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0287	1	1	0	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0288	1	1	0	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0289	1	1	0	0	0	0	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	g0290	1	1	0	0	0	0	ZNF541	chr19	47515690	47578148
ZNF543_chr19_57315472_57335770	0/0	g0001	83	2	14	53	4	10	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0002	43	2	8	22	7	4	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0003	27	8	1	14	0	4	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0004	22	12	3	5	1	1	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0005	19	1	2	15	0	1	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0006	12	0	10	0	2	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0007	10	3	1	4	0	2	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0008	9	0	0	9	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0009	7	1	1	5	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0010	7	1	0	5	0	1	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0011	6	1	0	4	0	1	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0012	6	0	4	0	2	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0013	5	2	0	3	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0014	5	2	2	0	0	1	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0015	5	0	0	5	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0016	5	5	0	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0017	4	0	4	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0018	4	3	1	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0019	4	0	3	1	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0020	4	0	0	3	0	1	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0021	4	4	0	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0022	3	3	0	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0023	3	3	0	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0024	3	0	1	1	0	1	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0025	3	0	0	3	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0026	3	0	3	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0027	3	0	0	1	0	2	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0028	2	2	0	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0029	2	0	2	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0030	2	0	0	1	0	1	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0031	2	2	0	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0032	2	0	2	0	0	0	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	g0033	2	2	0	0	0	0	ZNF543	chr19	57315472	57335770