JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF544_chr19_58223914_58268644	0/0	g0334	1	0	0	1	0	0	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	g0335	1	1	0	0	0	0	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	g0336	1	1	0	0	0	0	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	g0337	1	1	0	0	0	0	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	g0338	1	1	0	0	0	0	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	g0339	1	0	0	0	1	0	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	g0340	1	1	0	0	0	0	ZNF544	chr19	58223914	58268644
ZNF546_chr19_39992060_40026038	0/0	g0001	41	6	14	19	2	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0002	27	0	2	23	0	2	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	1/1	g0003	22	0	8	6	1	5	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0004	10	10	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0005	6	0	6	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0006	6	1	1	4	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0007	5	0	0	5	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0008	4	4	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0009	4	4	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0010	4	0	0	4	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0011	4	0	1	3	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0012	4	4	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0013	4	1	2	1	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0014	4	4	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0015	3	3	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0016	3	2	1	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0017	2	2	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0018	2	2	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0019	2	2	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0020	2	2	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0021	2	2	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0022	2	2	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0023	2	2	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0024	2	0	0	2	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0025	2	0	0	2	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0026	2	0	0	2	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0027	2	2	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0028	2	0	0	0	1	1	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0029	2	2	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0030	1	1	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0031	1	0	1	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0032	1	0	0	1	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0033	1	1	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0034	1	0	0	0	0	1	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0035	1	0	0	1	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0036	1	0	1	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0037	1	0	0	1	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0038	1	1	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0039	1	0	0	1	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0040	1	0	0	0	0	1	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0041	1	0	1	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0042	1	1	0	0	0	0	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	g0043	1	1	0	0	0	0	ZNF546	chr19	39992060	40026038