JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF548_chr19_57384854_57407992	0/0	g0097	1	0	0	1	0	0	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	g0098	1	0	0	0	0	1	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	g0099	1	0	1	0	0	0	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	g0100	1	1	0	0	0	0	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	g0101	1	0	0	0	0	1	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	g0102	1	0	1	0	0	0	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	g0103	1	1	0	0	0	0	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	g0104	1	1	0	0	0	0	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	g0105	1	0	0	1	0	0	ZNF548	chr19	57384854	57407992
ZNF549_chr19_57522356_57545876	0/1	g0001	165	23	30	91	4	16	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	1/0	g0002	62	3	17	29	6	6	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0003	48	12	13	16	3	4	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0004	10	0	0	6	0	4	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0005	7	7	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0006	6	6	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0007	5	5	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0008	5	5	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0009	4	4	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0010	4	0	0	4	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0011	4	4	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0012	3	0	0	3	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0013	3	0	0	3	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0014	3	0	0	0	0	3	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0015	3	3	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0016	3	2	0	0	1	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0017	2	2	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0018	2	2	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0019	2	2	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0020	2	0	0	2	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0021	2	2	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0022	2	0	0	0	2	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0023	2	0	0	1	0	1	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0024	2	0	0	2	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0025	2	2	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0026	2	2	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0027	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0028	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0029	1	0	0	0	0	1	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0030	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0031	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0032	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0033	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0034	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0035	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0036	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0037	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0038	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0039	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0040	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0041	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876