JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF549_chr19_57522356_57545876	0/0	g0042	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0043	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0044	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0045	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0046	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0047	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0048	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0049	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0050	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0051	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0052	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0053	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0054	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0055	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0056	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0057	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0058	1	0	0	0	0	1	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0059	1	0	0	0	0	1	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0060	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0061	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0062	1	0	0	1	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0063	1	0	1	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0064	1	1	0	0	0	0	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	g0065	1	0	0	0	0	1	ZNF549	chr19	57522356	57545876
ZNF550_chr19_57536838_57564863	0/1	g0001	43	3	12	19	1	7	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0002	24	0	1	16	1	6	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0003	21	1	2	16	1	1	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0004	20	1	1	16	0	2	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0005	19	0	5	14	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0006	14	7	2	5	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0007	12	4	0	8	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0008	11	1	7	1	0	2	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0009	10	1	0	8	0	1	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0010	9	0	1	5	2	1	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0011	8	7	1	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0012	5	2	2	0	0	1	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0013	5	0	4	0	1	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0014	5	0	0	5	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0015	4	0	3	0	0	1	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0016	4	4	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0017	4	0	0	4	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0018	4	0	1	1	0	2	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0019	4	4	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0020	4	3	0	0	0	1	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0021	4	0	0	3	0	1	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0022	3	0	1	0	2	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0023	3	0	0	0	0	3	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0024	3	0	3	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0025	3	3	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0026	3	0	0	3	0	0	ZNF550	chr19	57536838	57564863