JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF550_chr19_57536838_57564863	0/0	g0127	1	0	1	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0128	1	0	0	1	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0129	1	0	0	1	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0130	1	0	0	1	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0131	1	0	1	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0132	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0133	1	0	0	1	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0134	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0135	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0136	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0137	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0138	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0139	1	0	0	1	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0140	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0141	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0142	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0143	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0144	1	1	0	0	0	0	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	g0145	1	0	0	1	0	0	ZNF550	chr19	57536838	57564863
ZNF551_chr19_57676977_57695648	1/0	g0001	172	38	34	77	1	21	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0002	108	17	24	49	5	13	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0003	89	10	9	58	7	5	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0004	9	0	6	0	1	2	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0005	8	7	1	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0006	7	0	0	7	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0007	5	0	1	4	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0008	4	0	3	1	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0009	4	3	1	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0010	4	0	0	4	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0011	4	4	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0012	3	3	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0013	2	0	2	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0014	2	0	0	2	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0015	2	0	0	0	2	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0016	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0017	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0018	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0019	1	0	0	1	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/1	g0020	1	0	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0021	1	0	0	0	0	1	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0022	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0023	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0024	1	0	0	0	0	1	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0025	1	0	1	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0026	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0027	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0028	1	0	0	0	0	1	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0029	1	0	0	1	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0030	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	g0031	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648