JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF551_chr19_57676977_57695648	0/0	g0032	1	1	0	0	0	0	ZNF551	chr19	57676977	57695648
ZNF552_chr19_57802082_57819913	1/0	g0001	65	0	13	33	2	16	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0002	24	1	4	11	2	6	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0003	24	2	4	15	1	2	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/1	g0004	22	1	5	13	0	2	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0005	17	8	3	5	1	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0006	13	0	3	10	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0007	9	0	3	6	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0008	9	9	0	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0009	8	4	1	1	0	2	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0010	8	0	3	3	0	2	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0011	8	0	0	8	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0012	7	0	0	6	0	1	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0013	7	0	0	7	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0014	7	5	1	1	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0015	7	0	3	3	0	1	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0016	5	0	2	0	3	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0017	5	4	0	1	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0018	4	4	0	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0019	4	0	2	2	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0020	4	0	1	2	1	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0021	4	4	0	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0022	3	0	2	0	0	1	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0023	3	3	0	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0024	3	3	0	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0025	3	1	1	1	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0026	3	0	1	2	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0027	3	0	2	0	1	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0028	3	0	1	2	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0029	3	0	0	0	1	2	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0030	3	0	0	1	1	1	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0031	3	0	0	2	0	1	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0032	2	2	0	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0033	2	0	2	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0034	2	0	1	0	0	1	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0035	2	0	1	1	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0036	2	0	2	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0037	2	0	0	2	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0038	2	0	0	2	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0039	2	0	0	0	0	2	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0040	2	0	1	0	1	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0041	2	0	0	2	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0042	2	0	1	1	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0043	2	0	1	1	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0044	2	2	0	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0045	2	0	1	1	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0046	2	2	0	0	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0047	2	0	0	2	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0048	2	0	1	1	0	0	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	g0049	2	0	0	2	0	0	ZNF552	chr19	57802082	57819913