JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF554_chr19_2814868_2841735	0/0	g0300	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0301	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0302	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0303	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0304	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0305	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0306	1	0	0	0	0	1	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0307	1	1	0	0	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0308	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0309	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0310	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0311	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0312	1	1	0	0	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0313	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0314	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0315	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0316	1	1	0	0	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0317	1	1	0	0	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0318	1	1	0	0	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0319	1	1	0	0	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0320	1	0	0	0	0	1	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0321	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0322	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0323	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	g0324	1	0	0	1	0	0	ZNF554	chr19	2814868	2841735
ZNF555_chr19_2836475_2865471	0/0	g0001	65	8	13	31	1	12	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0002	61	1	14	41	0	5	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0003	18	0	1	12	0	5	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0004	11	9	1	0	0	1	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/1	g0005	9	0	4	0	3	1	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0006	7	3	4	0	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0007	7	0	4	0	3	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0008	7	1	6	0	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0009	7	0	2	5	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0010	7	0	2	0	0	5	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0011	6	6	0	0	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0012	5	0	0	5	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0013	5	5	0	0	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0014	4	0	0	4	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0015	4	0	2	0	2	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0016	3	2	1	0	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0017	3	3	0	0	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0018	3	3	0	0	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0019	3	0	0	3	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0020	3	0	0	2	1	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0021	3	0	1	2	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0022	3	0	0	3	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0023	2	2	0	0	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0024	2	2	0	0	0	0	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	g0025	2	2	0	0	0	0	ZNF555	chr19	2836475	2865471