JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF562_chr19_9636807_9680100	0/0	g0266	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0267	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0268	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0269	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0270	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0271	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0272	1	0	0	0	0	1	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0273	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0274	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0275	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0276	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0277	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0278	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0279	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0280	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0281	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0282	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0283	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0284	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0285	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0286	1	0	1	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0287	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	g0288	1	1	0	0	0	0	ZNF562	chr19	9636807	9680100
ZNF563_chr19_12312477_12338633	1/0	g0001	74	9	10	41	3	10	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0002	18	1	0	17	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0003	16	7	6	1	2	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0004	13	7	1	1	1	3	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0005	10	2	0	7	0	1	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0006	10	0	0	10	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0007	9	5	1	2	1	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0008	8	0	6	1	0	1	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0009	7	0	0	7	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0010	7	1	3	2	0	1	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0011	7	2	2	3	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0012	5	0	4	0	1	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0013	5	5	0	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0014	4	0	0	4	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0015	4	4	0	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0016	4	0	2	0	0	2	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0017	3	0	0	3	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0018	3	0	3	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0019	3	3	0	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0020	3	0	3	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0021	3	0	3	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0022	3	0	3	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0023	3	3	0	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0024	3	2	1	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0025	3	3	0	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0026	3	3	0	0	0	0	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	g0027	3	0	2	1	0	0	ZNF563	chr19	12312477	12338633